HL_6PPF_048

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUGAAUGC

Length

8 nucleotides

Bulged bases

6PPF|1|A|A|2059

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PPF_048 not in the Motif Atlas

Homologous match to HL_4WF9_047

Geometric discrepancy: 0.1892

The information below is about HL_4WF9_047

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_78372.2

Basepair signature

cWW-tWH-F-F-F

Number of instances in this motif group

11

Unit IDs

6PPF|1|A|G|2056
6PPF|1|A|U|2057
6PPF|1|A|G|2058
6PPF|1|A|A|2059
6PPF|1|A|A|2062
6PPF|1|A|U|2063
6PPF|1|A|G|2064
6PPF|1|A|C|2065

Current chains

Chain A

23S rRNA

Nearby chains

Chain b

50S ribosomal protein L32