HL_6PPF_061

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

CGCAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PPF_061 not in the Motif Atlas

Geometric match to HL_4V9F_070

Geometric discrepancy: 0.219

The information below is about HL_4V9F_070

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.5

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

428

Unit IDs

6PPF|1|A|C|2823
6PPF|1|A|G|2824
6PPF|1|A|C|2825
6PPF|1|A|A|2826
6PPF|1|A|A|2827
6PPF|1|A|G|2828

Current chains

Chain A

23S rRNA

Nearby chains