HL_6PPF_062

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

AAAGAUGAU

Length

9 nucleotides

Bulged bases

6PPF|1|A|A|2845

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PPF_062 not in the Motif Atlas

Homologous match to HL_5J7L_201

Geometric discrepancy: 0.1549

The information below is about HL_5J7L_201

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.6

Basepair signature

cWW-cSW-F-F-F-F

Number of instances in this motif group

9

Unit IDs

6PPF|1|A|A|2844
6PPF|1|A|A|2845
6PPF|1|A|A|2846
6PPF|1|A|G|2847
6PPF|1|A|A|2848
6PPF|1|A|U|2849
6PPF|1|A|G|2850
6PPF|1|A|A|2851
6PPF|1|A|U|2852

Current chains

Chain A

23S rRNA

Nearby chains

Chain D

50S ribosomal protein L3

Chain N

50S ribosomal protein L17