HL_6PPF_071

3D structure

PDB id

6PPF (explore in PDB, NAKB, or RNA 3D Hub)

Description

Bacterial 45SRbgA ribosomal particle class B

Experimental method

ELECTRON MICROSCOPY

Resolution

3.4 Å

Loop

Sequence

GUUGAUAUUC

Length

10 nucleotides

Bulged bases

6PPF|1|A|U|1435, 6PPF|1|A|U|1436

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6PPF_071 not in the Motif Atlas

Homologous match to HL_4WF9_035

Geometric discrepancy: 0.2513

The information below is about HL_4WF9_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_77449.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6PPF|1|A|G|1428
6PPF|1|A|U|1429
6PPF|1|A|U|1430
6PPF|1|A|G|1431
6PPF|1|A|A|1432
6PPF|1|A|U|1433
6PPF|1|A|A|1434
6PPF|1|A|U|1435
6PPF|1|A|U|1436
6PPF|1|A|C|1437

Current chains

Chain A

23S rRNA

Nearby chains

Chain T

50S ribosomal protein L23