HL_6Q8Y_011

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CCAAGG

Length

6 nucleotides

Bulged bases

6Q8Y|1|2|A|416

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q8Y_011 not in the Motif Atlas

Homologous match to HL_4V88_196

Geometric discrepancy: 0.2335

The information below is about HL_4V88_196

Detailed Annotation

UNCG

Broad Annotation

No text annotation

Motif group

HL_34617.1

Basepair signature

cWW-tSW-F

Number of instances in this motif group

57

Unit IDs

6Q8Y|1|2|C|414
6Q8Y|1|2|C|415
6Q8Y|1|2|A|416
6Q8Y|1|2|A|417
6Q8Y|1|2|G|418
6Q8Y|1|2|G|419

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain AB

60S ribosomal protein L23-A

Chain T

40S ribosomal protein S6-A

Chain d

40S ribosomal protein S24-A