HL_6Q8Y_016

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGGCCGGUCGGAUUUCCA

Length

18 nucleotides

Bulged bases

None detected

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q8Y|1|2|U|650
6Q8Y|1|2|G|651
6Q8Y|1|2|G|652
6Q8Y|1|2|C|653
6Q8Y|1|2|C|654
6Q8Y|1|2|G|655
6Q8Y|1|2|G|656
6Q8Y|1|2|U|657
6Q8Y|1|2|C|658
6Q8Y|1|2|G|676
6Q8Y|1|2|G|677
6Q8Y|1|2|A|678
6Q8Y|1|2|U|679
6Q8Y|1|2|U|680
6Q8Y|1|2|U|681
6Q8Y|1|2|C|682
6Q8Y|1|2|C|683
6Q8Y|1|2|A|684

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain W

40S ribosomal protein S9-A