HL_6Q8Y_017

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGCUAACCUUGAGUCCUUGUGGCUCUUGGCGAACC

Length

35 nucleotides

Bulged bases

6Q8Y|1|2|C|709, 6Q8Y|1|2|U|718, 6Q8Y|1|2|U|719, 6Q8Y|1|2|G|720, 6Q8Y|1|2|G|722, 6Q8Y|1|2|U|725, 6Q8Y|1|2|G|732, 6Q8Y|1|2|A|733

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q8Y|1|2|G|702
6Q8Y|1|2|G|703
6Q8Y|1|2|C|704
6Q8Y|1|2|U|705
6Q8Y|1|2|A|706
6Q8Y|1|2|A|707
6Q8Y|1|2|C|708
6Q8Y|1|2|C|709
6Q8Y|1|2|U|710
6Q8Y|1|2|U|711
6Q8Y|1|2|G|712
6Q8Y|1|2|A|713
6Q8Y|1|2|G|714
6Q8Y|1|2|U|715
6Q8Y|1|2|C|716
6Q8Y|1|2|C|717
6Q8Y|1|2|U|718
6Q8Y|1|2|U|719
6Q8Y|1|2|G|720
6Q8Y|1|2|U|721
6Q8Y|1|2|G|722
6Q8Y|1|2|G|723
6Q8Y|1|2|C|724
6Q8Y|1|2|U|725
6Q8Y|1|2|C|726
6Q8Y|1|2|U|727
6Q8Y|1|2|U|728
6Q8Y|1|2|G|729
6Q8Y|1|2|G|730
6Q8Y|1|2|C|731
6Q8Y|1|2|G|732
6Q8Y|1|2|A|733
6Q8Y|1|2|A|734
6Q8Y|1|2|C|735
6Q8Y|1|2|C|736

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain S

40S ribosomal protein S4-A

Chain T

40S ribosomal protein S6-A