HL_6Q8Y_022

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q8Y_022 not in the Motif Atlas

Homologous match to HL_4V88_207

Geometric discrepancy: 0.0922

The information below is about HL_4V88_207

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6Q8Y|1|2|C|937
6Q8Y|1|2|G|938
6Q8Y|1|2|A|939
6Q8Y|1|2|A|940
6Q8Y|1|2|A|941
6Q8Y|1|2|G|942

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Y

40S ribosomal protein S13

Chain e

40S ribosomal protein S26-B