HL_6Q8Y_024

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUUUUUAAUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q8Y_024 not in the Motif Atlas

Homologous match to HL_8P9A_212

Geometric discrepancy: 0.4222

The information below is about HL_8P9A_212

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91620.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

6Q8Y|1|2|U|1055
6Q8Y|1|2|U|1056
6Q8Y|1|2|U|1057
6Q8Y|1|2|U|1058
6Q8Y|1|2|U|1059
6Q8Y|1|2|U|1060
6Q8Y|1|2|A|1061
6Q8Y|1|2|A|1062
6Q8Y|1|2|U|1063
6Q8Y|1|2|G|1064

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain Q

40S ribosomal protein S1-A

Chain f

40S ribosomal protein S27-A

Chain z

5'-3' exoribonuclease 1