HL_6Q8Y_046
3D structure
- PDB id
- 6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GGUAAAUUCC
- Length
- 10 nucleotides
- Bulged bases
- 6Q8Y|1|BQ|G|304, 6Q8Y|1|BQ|U|305
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Q8Y_046 not in the Motif Atlas
- Homologous match to HL_8C3A_009
- Geometric discrepancy: 0.056
- The information below is about HL_8C3A_009
- Detailed Annotation
- Pseudoknot geometry
- Broad Annotation
- No text annotation
- Motif group
- HL_15076.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
6Q8Y|1|BQ|G|303
6Q8Y|1|BQ|G|304
6Q8Y|1|BQ|U|305
6Q8Y|1|BQ|A|306
6Q8Y|1|BQ|A|307
6Q8Y|1|BQ|A|308
6Q8Y|1|BQ|U|309
6Q8Y|1|BQ|U|310
6Q8Y|1|BQ|C|311
6Q8Y|1|BQ|C|312
Current chains
- Chain BQ
- 25S ribosomal RNA
Nearby chains
- Chain AC
- 60S ribosomal protein L36-A
- Chain AP
- 60S ribosomal protein L42-A
- Chain AQ
- 60S ribosomal protein L15-A
- Chain AR
- 60S ribosomal protein L28
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