HL_6Q8Y_053

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UGAAAG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q8Y_053 not in the Motif Atlas

Homologous match to HL_8C3A_016

Geometric discrepancy: 0.1067

The information below is about HL_8C3A_016

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6Q8Y|1|BQ|U|707
6Q8Y|1|BQ|G|708
6Q8Y|1|BQ|A|709
6Q8Y|1|BQ|A|710
6Q8Y|1|BQ|A|711
6Q8Y|1|BQ|G|712

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AC

60S ribosomal protein L36-A

Chain AJ

60S ribosomal protein L13-A

Chain AR

60S ribosomal protein L28

Chain BB

60S ribosomal protein L18-A