HL_6Q8Y_062

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUAAGC

Length

7 nucleotides

Bulged bases

6Q8Y|1|BQ|G|1131

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q8Y_062 not in the Motif Atlas

Homologous match to HL_5TBW_025

Geometric discrepancy: 0.0655

The information below is about HL_5TBW_025

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6Q8Y|1|BQ|G|1126
6Q8Y|1|BQ|G|1127
6Q8Y|1|BQ|U|1128
6Q8Y|1|BQ|A|1129
6Q8Y|1|BQ|A|1130
6Q8Y|1|BQ|G|1131
6Q8Y|1|BQ|C|1132

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain BD

60S ribosomal protein L10