HL_6Q8Y_064

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGUGGCCAUGGAAGUCGGAAUCC

Length

23 nucleotides

Bulged bases

6Q8Y|1|BQ|G|1236, 6Q8Y|1|BQ|U|1241, 6Q8Y|1|BQ|A|1245, 6Q8Y|1|BQ|C|1248

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q8Y|1|BQ|G|1233
6Q8Y|1|BQ|G|1234
6Q8Y|1|BQ|U|1235
6Q8Y|1|BQ|G|1236
6Q8Y|1|BQ|G|1237
6Q8Y|1|BQ|C|1238
6Q8Y|1|BQ|C|1239
6Q8Y|1|BQ|A|1240
6Q8Y|1|BQ|U|1241
6Q8Y|1|BQ|G|1242
6Q8Y|1|BQ|G|1243
6Q8Y|1|BQ|A|1244
6Q8Y|1|BQ|A|1245
6Q8Y|1|BQ|G|1246
6Q8Y|1|BQ|U|1247
6Q8Y|1|BQ|C|1248
6Q8Y|1|BQ|G|1249
6Q8Y|1|BQ|G|1250
6Q8Y|1|BQ|A|1251
6Q8Y|1|BQ|A|1252
6Q8Y|1|BQ|U|1253
6Q8Y|1|BQ|C|1254
6Q8Y|1|BQ|C|1255

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains