HL_6Q8Y_066

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

UUGAUAUGAUG

Length

11 nucleotides

Bulged bases

6Q8Y|1|BQ|G|1354, 6Q8Y|1|BQ|U|1356

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q8Y_066 not in the Motif Atlas

Geometric match to HL_4OOG_001

Geometric discrepancy: 0.2357

The information below is about HL_4OOG_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.2

Basepair signature

cWW-F

Number of instances in this motif group

17

Unit IDs

6Q8Y|1|BQ|U|1347
6Q8Y|1|BQ|U|1348
6Q8Y|1|BQ|G|1349
6Q8Y|1|BQ|A|1350
6Q8Y|1|BQ|U|1351
6Q8Y|1|BQ|A|1352
6Q8Y|1|BQ|U|1353
6Q8Y|1|BQ|G|1354
6Q8Y|1|BQ|A|1355
6Q8Y|1|BQ|U|1356
6Q8Y|1|BQ|G|1357

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain BB

60S ribosomal protein L18-A

Chain BE

60S ribosomal protein L4-A

Chain BM

60S ribosomal protein L6-A