HL_6Q8Y_072

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUUAAGAUUC

Length

10 nucleotides

Bulged bases

6Q8Y|1|BQ|U|1606, 6Q8Y|1|BQ|U|1607

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q8Y_072 not in the Motif Atlas

Homologous match to HL_5TBW_035

Geometric discrepancy: 0.0817

The information below is about HL_5TBW_035

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35087.1

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

7

Unit IDs

6Q8Y|1|BQ|G|1599
6Q8Y|1|BQ|U|1600
6Q8Y|1|BQ|U|1601
6Q8Y|1|BQ|A|1602
6Q8Y|1|BQ|A|1603
6Q8Y|1|BQ|G|1604
6Q8Y|1|BQ|A|1605
6Q8Y|1|BQ|U|1606
6Q8Y|1|BQ|U|1607
6Q8Y|1|BQ|C|1608

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AH

60S ribosomal protein L25

Chain BF

60S ribosomal protein L19-A

Chain BN

60S ribosomal protein L34-A