HL_6Q8Y_081

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GGGUAC

Length

6 nucleotides

Bulged bases

6Q8Y|1|BQ|G|1954, 6Q8Y|1|BQ|U|1955

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q8Y_081 not in the Motif Atlas

Geometric match to HL_7RQB_011

Geometric discrepancy: 0.3164

The information below is about HL_7RQB_011

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_70546.1

Basepair signature

cWW-F

Number of instances in this motif group

18

Unit IDs

6Q8Y|1|BQ|G|1952
6Q8Y|1|BQ|G|1953
6Q8Y|1|BQ|G|1954
6Q8Y|1|BQ|U|1955
6Q8Y|1|BQ|A|2093
6Q8Y|1|BQ|C|2094

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain BF

60S ribosomal protein L19-A

Chain X

40S ribosomal protein S11-A