HL_6Q8Y_090

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AAUUCAUUUU

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q8Y|1|BQ|A|2535
6Q8Y|1|BQ|A|2536
6Q8Y|1|BQ|U|2537
6Q8Y|1|BQ|U|2538
6Q8Y|1|BQ|C|2539
6Q8Y|1|BQ|A|2540
6Q8Y|1|BQ|U|2541
6Q8Y|1|BQ|U|2542
6Q8Y|1|BQ|U|2543
6Q8Y|1|BQ|U|2544

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AA

60S ribosomal protein L8-A

Chain BN

60S ribosomal protein L34-A

Chain Q

40S ribosomal protein S1-A

Chain z

5'-3' exoribonuclease 1