HL_6Q8Y_092

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

6Q8Y|1|BQ|G|2618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q8Y_092 not in the Motif Atlas

Homologous match to HL_8C3A_055

Geometric discrepancy: 0.1184

The information below is about HL_8C3A_055

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_47383.2

Basepair signature

cWW-F-F-cWW-F-F

Number of instances in this motif group

11

Unit IDs

6Q8Y|1|BQ|C|2616
6Q8Y|1|BQ|U|2617
6Q8Y|1|BQ|G|2618
6Q8Y|1|BQ|G|2619
6Q8Y|1|BQ|G|2620
6Q8Y|1|BQ|G|2621
6Q8Y|1|BQ|C|2622
6Q8Y|1|BQ|G|2623
6Q8Y|1|BQ|G|2624

Current chains

Chain BQ

25S ribosomal RNA

Nearby chains

Chain AV

60S ribosomal protein L29

Chain BD

60S ribosomal protein L10

Chain n

Transfer RNA; tRNA