HL_6Q8Y_114

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUAUUC

Length

6 nucleotides

Bulged bases

6Q8Y|1|BS|U|125, 6Q8Y|1|BS|U|127, 6Q8Y|1|BS|U|128

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q8Y_114 not in the Motif Atlas

Homologous match to HL_5TBW_076

Geometric discrepancy: 0.1657

The information below is about HL_5TBW_076

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_45177.3

Basepair signature

cWW-F-F-F

Number of instances in this motif group

3

Unit IDs

6Q8Y|1|BS|G|124
6Q8Y|1|BS|U|125
6Q8Y|1|BS|A|126
6Q8Y|1|BS|U|127
6Q8Y|1|BS|U|128
6Q8Y|1|BS|C|129

Current chains

Chain BS

5.8S ribosomal RNA

Nearby chains

Chain AH

60S ribosomal protein L25

Chain BQ

Large subunit ribosomal RNA; LSU rRNA