HL_6Q8Y_123

3D structure

PDB id

6Q8Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the mRNA translating and degrading yeast 80S ribosome-Xrn1 nuclease complex

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AUUUUGUUGGUUUCU

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q8Y_123 not in the Motif Atlas

Homologous match to HL_8P9A_236

Geometric discrepancy: 0.3336

The information below is about HL_8P9A_236

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_88364.4

Basepair signature

cWW-cWW-F-F-F-F-F-F-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

6Q8Y|1|2|A|829
6Q8Y|1|2|U|830
6Q8Y|1|2|U|831
6Q8Y|1|2|U|832
6Q8Y|1|2|U|833
6Q8Y|1|2|G|834
6Q8Y|1|2|U|835
6Q8Y|1|2|U|836
6Q8Y|1|2|G|837
6Q8Y|1|2|G|838
6Q8Y|1|2|U|839
6Q8Y|1|2|U|840
6Q8Y|1|2|U|841
6Q8Y|1|2|C|842
6Q8Y|1|2|U|843

Current chains

Chain 2

18S ribosomal RNA

Nearby chains

Chain T

40S ribosomal protein S6-A

Chain X

40S ribosomal protein S11-A