HL_6Q9A_016

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCUUAGGC

Length

8 nucleotides

Bulged bases

6Q9A|1|1|U|546

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q9A_016 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2025

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.4

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6Q9A|1|1|G|543
6Q9A|1|1|C|544
6Q9A|1|1|U|545
6Q9A|1|1|U|546
6Q9A|1|1|A|547
6Q9A|1|1|G|548
6Q9A|1|1|G|549
6Q9A|1|1|C|550

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain J

50S ribosomal protein L13

Chain R

50S ribosomal protein L21