HL_6Q9A_020

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UUAACUG

Length

7 nucleotides

Bulged bases

6Q9A|1|1|U|646

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q9A_020 not in the Motif Atlas

Homologous match to HL_5J7L_153

Geometric discrepancy: 0.3455

The information below is about HL_5J7L_153

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13529.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

2

Unit IDs

6Q9A|1|1|U|641
6Q9A|1|1|U|642
6Q9A|1|1|A|643
6Q9A|1|1|A|644
6Q9A|1|1|C|645
6Q9A|1|1|U|646
6Q9A|1|1|G|647

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain c

50S ribosomal protein L33

Chain e

50S ribosomal protein L35