HL_6Q9A_035

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

6Q9A|1|1|U|1396, 6Q9A|1|1|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q9A_035 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.1559

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6Q9A|1|1|G|1389
6Q9A|1|1|U|1390
6Q9A|1|1|U|1391
6Q9A|1|1|A|1392
6Q9A|1|1|A|1393
6Q9A|1|1|U|1394
6Q9A|1|1|A|1395
6Q9A|1|1|U|1396
6Q9A|1|1|U|1397
6Q9A|1|1|C|1398

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain T

50S ribosomal protein L23