HL_6Q9A_040
3D structure
- PDB id
- 6Q9A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CGACAC(6MZ)G
- Length
- 8 nucleotides
- Bulged bases
- 6Q9A|1|1|A|1616
- QA status
- Modified nucleotides: 6MZ
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Q9A_040 not in the Motif Atlas
- Homologous match to HL_5J7L_173
- Geometric discrepancy: 0.1049
- The information below is about HL_5J7L_173
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_89567.2
- Basepair signature
- cWW-F-F-F
- Number of instances in this motif group
- 8
Unit IDs
6Q9A|1|1|C|1612
6Q9A|1|1|G|1613
6Q9A|1|1|A|1614
6Q9A|1|1|C|1615
6Q9A|1|1|A|1616
6Q9A|1|1|C|1617
6Q9A|1|1|6MZ|1618
6Q9A|1|1|G|1619
Current chains
- Chain 1
- 23S ribosomal RNA
Nearby chains
- Chain 6
- Nascent peptide
- Chain S
- 50S ribosomal protein L22
- Chain d
- 50S ribosomal protein L34
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