HL_6Q9A_053

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUG(OMG)GGCGG

Length

9 nucleotides

Bulged bases

6Q9A|1|1|G|2250

QA status

Modified nucleotides: OMG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q9A_053 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1164

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_11974.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

17

Unit IDs

6Q9A|1|1|C|2248
6Q9A|1|1|U|2249
6Q9A|1|1|G|2250
6Q9A|1|1|OMG|2251
6Q9A|1|1|G|2252
6Q9A|1|1|G|2253
6Q9A|1|1|C|2254
6Q9A|1|1|G|2255
6Q9A|1|1|G|2256

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain 7

Transfer RNA; tRNA

Chain M

50S ribosomal protein L16

Chain W

50S ribosomal protein L27