HL_6Q9A_059

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

6Q9A|1|1|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q9A_059 not in the Motif Atlas

Homologous match to HL_7RQB_059

Geometric discrepancy: 0.1423

The information below is about HL_7RQB_059

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_40210.2

Basepair signature

cWW-tSH-F

Number of instances in this motif group

12

Unit IDs

6Q9A|1|1|U|2404
6Q9A|1|1|G|2405
6Q9A|1|1|A|2406
6Q9A|1|1|A|2407
6Q9A|1|1|U|2408
6Q9A|1|1|G|2409
6Q9A|1|1|G|2410
6Q9A|1|1|A|2411
6Q9A|1|1|A|2412
6Q9A|1|1|G|2413

Current chains

Chain 1

23S ribosomal RNA

Nearby chains

Chain L

50S ribosomal protein L15