HL_6Q9A_067

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUUUAAG

Length

7 nucleotides

Bulged bases

6Q9A|1|1|U|2797, 6Q9A|1|1|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q9A_067 not in the Motif Atlas

Homologous match to HL_5J7L_200

Geometric discrepancy: 0.2433

The information below is about HL_5J7L_200

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_08100.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

4

Unit IDs

6Q9A|1|1|C|2795
6Q9A|1|1|U|2796
6Q9A|1|1|U|2797
6Q9A|1|1|U|2798
6Q9A|1|1|A|2799
6Q9A|1|1|A|2800
6Q9A|1|1|G|2801

Current chains

Chain 1

23S ribosomal RNA

Nearby chains