HL_6Q9A_081

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GUUAAUACC

Length

9 nucleotides

Bulged bases

6Q9A|1|2|U|467

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q9A_081 not in the Motif Atlas

Homologous match to HL_5J7L_012

Geometric discrepancy: 0.1822

The information below is about HL_5J7L_012

Detailed Annotation

GNRA wlth extra near cWW

Broad Annotation

GNRA wlth extra near cWW

Motif group

HL_81538.2

Basepair signature

cWW-tSH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6Q9A|1|2|G|462
6Q9A|1|2|U|463
6Q9A|1|2|U|464
6Q9A|1|2|A|465
6Q9A|1|2|A|466
6Q9A|1|2|U|467
6Q9A|1|2|A|468
6Q9A|1|2|C|469
6Q9A|1|2|C|470

Current chains

Chain 2

16S ribosomal RNA

Nearby chains