HL_6Q9A_082

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GCAGCC(7MG)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q9A_082 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.1675

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.3

Basepair signature

cWW-F

Number of instances in this motif group

5

Unit IDs

6Q9A|1|2|G|521
6Q9A|1|2|C|522
6Q9A|1|2|A|523
6Q9A|1|2|G|524
6Q9A|1|2|C|525
6Q9A|1|2|C|526
6Q9A|1|2|7MG|527
6Q9A|1|2|C|528

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 4

Transfer-messenger RNA; tmRNA

Chain q

30S ribosomal protein S12