HL_6Q9A_087

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CCCUUGAGG

Length

9 nucleotides

Bulged bases

6Q9A|1|2|U|842, 6Q9A|1|2|U|843

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q9A_087 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.1812

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_33487.1

Basepair signature

cWW-cWW

Number of instances in this motif group

2

Unit IDs

6Q9A|1|2|C|839
6Q9A|1|2|C|840
6Q9A|1|2|C|841
6Q9A|1|2|U|842
6Q9A|1|2|U|843
6Q9A|1|2|G|844
6Q9A|1|2|A|845
6Q9A|1|2|G|846
6Q9A|1|2|G|847

Current chains

Chain 2

16S ribosomal RNA

Nearby chains

Chain 5

SsrA-binding protein

Chain g

30S ribosomal protein S2

Chain w

30S ribosomal protein S18