HL_6Q9A_105

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CUCCGCUCUUAG

Length

12 nucleotides

Bulged bases

6Q9A|1|4|C|154

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6Q9A_105 not in the Motif Atlas

Geometric match to HL_7KI3_001

Geometric discrepancy: 0.2729

The information below is about HL_7KI3_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

6Q9A|1|4|C|152
6Q9A|1|4|U|153
6Q9A|1|4|C|154
6Q9A|1|4|C|155
6Q9A|1|4|G|156
6Q9A|1|4|C|157
6Q9A|1|4|U|158
6Q9A|1|4|C|159
6Q9A|1|4|U|160
6Q9A|1|4|U|161
6Q9A|1|4|A|162
6Q9A|1|4|G|163

Current chains

Chain 4

tmRNA

Nearby chains

Chain o

30S ribosomal protein S10