HL_6Q9A_109
3D structure
- PDB id
- 6Q9A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- CUUUGCACG
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Q9A_109 not in the Motif Atlas
- Homologous match to HL_6UFG_007
- Geometric discrepancy: 0.1475
- The information below is about HL_6UFG_007
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.7
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
6Q9A|1|7|C|31
6Q9A|1|7|U|32
6Q9A|1|7|U|33
6Q9A|1|7|U|34
6Q9A|1|7|G|35
6Q9A|1|7|C|36
6Q9A|1|7|A|37
6Q9A|1|7|C|38
6Q9A|1|7|G|39
Current chains
- Chain 7
- P-site tRNA
Nearby chains
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 4
- Transfer-messenger RNA; tmRNA
- Chain n
- 30S ribosomal protein S9
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