HL_6Q9A_110
3D structure
- PDB id
- 6Q9A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.7 Å
Loop
- Sequence
- GUUCGAUCC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6Q9A_110 not in the Motif Atlas
- Homologous match to HL_5AXM_003
- Geometric discrepancy: 0.3209
- The information below is about HL_5AXM_003
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 96
Unit IDs
6Q9A|1|7|G|53
6Q9A|1|7|U|54
6Q9A|1|7|U|55
6Q9A|1|7|C|56
6Q9A|1|7|G|57
6Q9A|1|7|A|58
6Q9A|1|7|U|59
6Q9A|1|7|C|60
6Q9A|1|7|C|61
Current chains
- Chain 7
- P-site tRNA
Nearby chains
- Chain 1
- Large subunit ribosomal RNA; LSU rRNA
- Chain E
- 50S ribosomal protein L5
- Chain M
- 50S ribosomal protein L16
Coloring options: