HL_6Q9A_116

3D structure

PDB id

6Q9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of tmRNA SmpB bound past E site of E. coli 70S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

CGGGUUCAACUCCCG

Length

15 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6Q9A|1|4|C|337
6Q9A|1|4|G|338
6Q9A|1|4|G|339
6Q9A|1|4|G|340
6Q9A|1|4|U|341
6Q9A|1|4|U|342
6Q9A|1|4|C|343
6Q9A|1|4|A|344
6Q9A|1|4|A|345
6Q9A|1|4|C|346
6Q9A|1|4|U|347
6Q9A|1|4|C|348
6Q9A|1|4|C|349
6Q9A|1|4|C|350
6Q9A|1|4|G|351

Current chains

Chain 4

tmRNA

Nearby chains

Chain 5

SsrA-binding protein