HL_6QCX_001
3D structure
- PDB id
- 6QCX (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal structure of influenza B polymerase initiation state with capped 15-mer RNA primer
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.08 Å
Loop
- Sequence
- UAGUAA
- Length
- 6 nucleotides
- Bulged bases
- 6QCX|1|V|U|6
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6QCX_001 not in the Motif Atlas
- Geometric match to HL_5FMZ_001
- Geometric discrepancy: 0.0663
- The information below is about HL_5FMZ_001
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_91813.1
- Basepair signature
- cWW-cSW-F
- Number of instances in this motif group
- 24
Unit IDs
6QCX|1|V|U|3
6QCX|1|V|A|4
6QCX|1|V|G|5
6QCX|1|V|U|6
6QCX|1|V|A|7
6QCX|1|V|A|8
Current chains
- Chain V
- RNA (5'-R(P*AP*GP*UP*AP*GP*UP*AP*AP*CP*AP*AP*GP*AP*G)-3')
Nearby chains
- Chain A
- Polymerase acidic protein
- Chain B
- RNA-directed RNA polymerase catalytic subunit
- Chain R
- RNA (5'-R(*UP*AP*UP*AP*CP*CP*UP*CP*UP*GP*CP*UP*UP*CP*UP*GP*CP*UP*AP*UP*U)-3')
Coloring options: