HL_6QDV_001

3D structure

PDB id

6QDV (explore in PDB, NAKB, or RNA 3D Hub)

Description

Human post-catalytic P complex spliceosome

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

GUAUUGCAGUACCUC

Length

15 nucleotides

Bulged bases

6QDV|1|2|C|164, 6QDV|1|2|U|167

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

6QDV|1|2|G|158
6QDV|1|2|U|159
6QDV|1|2|A|160
6QDV|1|2|U|161
6QDV|1|2|U|162
6QDV|1|2|G|163
6QDV|1|2|C|164
6QDV|1|2|A|165
6QDV|1|2|G|166
6QDV|1|2|U|167
6QDV|1|2|A|168
6QDV|1|2|C|169
6QDV|1|2|C|170
6QDV|1|2|U|171
6QDV|1|2|C|172

Current chains

Chain 2

U2 snRNA

Nearby chains

Chain D

PRKR-interacting protein 1

Chain W

U2 small nuclear ribonucleoprotein A'

Chain Y

U2 small nuclear ribonucleoprotein B''

Chain n

Small nuclear ribonucleoprotein Sm D3