HL_6QDV_002
3D structure
- PDB id
- 6QDV (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Human post-catalytic P complex spliceosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.3 Å
Loop
- Sequence
- UCGCCUUUUACUA
- Length
- 13 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
6QDV|1|5|U|35
6QDV|1|5|C|36
6QDV|1|5|G|37
6QDV|1|5|C|38
6QDV|1|5|C|39
6QDV|1|5|U|40
6QDV|1|5|U|41
6QDV|1|5|U|42
6QDV|1|5|U|43
6QDV|1|5|A|44
6QDV|1|5|C|45
6QDV|1|5|U|46
6QDV|1|5|A|47
Current chains
- Chain 5
- U5 snRNA
Nearby chains
- Chain 6
- U6 spliceosomal RNA; U6 snRNA
- Chain A
- Pre-mRNA-processing-splicing factor 8
- Chain C
- 116 kDa U5 small nuclear ribonucleoprotein component
- Chain E
- Ligated exons: MINX mRNA
- Chain J
- Pleiotropic regulator 1
- Chain P
- Spliceosome-associated protein CWC15 homolog
- Chain R
- Serine/arginine repetitive matrix protein 2
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