HL_6QIK_028

3D structure

PDB id

6QIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GUGUAACAAC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QIK_028 not in the Motif Atlas

Geometric match to HL_5TBW_028

Geometric discrepancy: 0.1612

The information below is about HL_5TBW_028

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.2

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

14

Unit IDs

6QIK|1|A|G|1266
6QIK|1|A|U|1267
6QIK|1|A|G|1268
6QIK|1|A|U|1269
6QIK|1|A|A|1270
6QIK|1|A|A|1271
6QIK|1|A|C|1272
6QIK|1|A|A|1273
6QIK|1|A|A|1274
6QIK|1|A|C|1275

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain t

Ubiquitin-60S ribosomal protein L40