HL_6QIK_033

3D structure

PDB id

6QIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

GAAGCU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QIK_033 not in the Motif Atlas

Homologous match to HL_8C3A_033

Geometric discrepancy: 0.0995

The information below is about HL_8C3A_033

Detailed Annotation

GNRA variation

Broad Annotation

GNRA variation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6QIK|1|A|G|1544
6QIK|1|A|A|1545
6QIK|1|A|A|1546
6QIK|1|A|G|1547
6QIK|1|A|C|1548
6QIK|1|A|U|1549

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain O

60S ribosomal protein L15-A

Chain i

60S ribosomal protein L37-A