HL_6QIK_035
3D structure
- PDB id
- 6QIK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.1 Å
Loop
- Sequence
- GUUAAGAUUC
- Length
- 10 nucleotides
- Bulged bases
- 6QIK|1|A|U|1606, 6QIK|1|A|U|1607
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_6QIK_035 not in the Motif Atlas
- Homologous match to HL_5TBW_035
- Geometric discrepancy: 0.097
- The information below is about HL_5TBW_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_35087.1
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
6QIK|1|A|G|1599
6QIK|1|A|U|1600
6QIK|1|A|U|1601
6QIK|1|A|A|1602
6QIK|1|A|A|1603
6QIK|1|A|G|1604
6QIK|1|A|A|1605
6QIK|1|A|U|1606
6QIK|1|A|U|1607
6QIK|1|A|C|1608
Current chains
- Chain A
- 25S ribosomal RNA
Nearby chains
- Chain R
- 60S ribosomal protein L19-A
- Chain W
- 60S ribosomal protein L25
- Chain g
- 60S ribosomal protein L34-A
Coloring options: