HL_6QIK_048

3D structure

PDB id

6QIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

AGAAAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QIK_048 not in the Motif Atlas

Homologous match to HL_8C3A_048

Geometric discrepancy: 0.1031

The information below is about HL_8C3A_048

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6QIK|1|A|A|2220
6QIK|1|A|G|2221
6QIK|1|A|A|2222
6QIK|1|A|A|2223
6QIK|1|A|A|2224
6QIK|1|A|U|2225

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain h

60S ribosomal protein L36-A

Chain l

60S ribosomal protein L42-A