HL_6QIK_057

3D structure

PDB id

6QIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CAAAAGGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QIK_057 not in the Motif Atlas

Homologous match to HL_5TBW_057

Geometric discrepancy: 0.1197

The information below is about HL_5TBW_057

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.1

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

26

Unit IDs

6QIK|1|A|C|2693
6QIK|1|A|A|2694
6QIK|1|A|A|2695
6QIK|1|A|A|2696
6QIK|1|A|A|2697
6QIK|1|A|G|2698
6QIK|1|A|G|2699
6QIK|1|A|G|2700

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain T

60S ribosomal protein L21-A

Chain l

60S ribosomal protein L42-A