HL_6QIK_061

3D structure

PDB id

6QIK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structures of Lsg1-TAP pre-60S ribosomal particles

Experimental method

ELECTRON MICROSCOPY

Resolution

3.1 Å

Loop

Sequence

CGUUCAUAG

Length

9 nucleotides

Bulged bases

6QIK|1|A|U|2842, 6QIK|1|A|A|2845, 6QIK|1|A|U|2846

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QIK_061 not in the Motif Atlas

Geometric match to HL_1P6V_001

Geometric discrepancy: 0.3353

The information below is about HL_1P6V_001

Detailed Annotation

UNCG variation

Broad Annotation

UNCG variation

Motif group

HL_53890.2

Basepair signature

cWW-F-F-F

Number of instances in this motif group

15

Unit IDs

6QIK|1|A|C|2840
6QIK|1|A|G|2841
6QIK|1|A|U|2842
6QIK|1|A|U|2843
6QIK|1|A|C|2844
6QIK|1|A|A|2845
6QIK|1|A|U|2846
6QIK|1|A|A|2847
6QIK|1|A|G|2848

Current chains

Chain A

25S ribosomal RNA

Nearby chains

Chain t

Ubiquitin-60S ribosomal protein L40