HL_6QNQ_013

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GCAGCC(7MG)C

Length

8 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: 7MG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QNQ_013 not in the Motif Atlas

Geometric match to HL_5NFV_001

Geometric discrepancy: 0.2966

The information below is about HL_5NFV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69752.2

Basepair signature

cWW-F

Number of instances in this motif group

7

Unit IDs

6QNQ|1|13|G|521
6QNQ|1|13|C|522
6QNQ|1|13|A|523
6QNQ|1|13|G|524
6QNQ|1|13|C|525
6QNQ|1|13|C|526
6QNQ|1|13|7MG|527
6QNQ|1|13|C|528

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 3I

30S ribosomal protein S12

Chain 4K

mRNA