3D structure

PDB id
6QNQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome initiation complex (IC) with experimentally assigned potassium ions
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
GGGUCUCCU
Length
9 nucleotides
Bulged bases
6QNQ|1|13|U|841
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6QNQ_018 not in the Motif Atlas
Homologous match to HL_5J7L_018
Geometric discrepancy: 0.4312
The information below is about HL_5J7L_018
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_37344.1
Basepair signature
cWW-F-F
Number of instances in this motif group
2

Unit IDs

6QNQ|1|13|G|836
6QNQ|1|13|G|837
6QNQ|1|13|G|838
6QNQ|1|13|U|841
6QNQ|1|13|C|842
6QNQ|1|13|U|843
6QNQ|1|13|C|848
6QNQ|1|13|C|849
6QNQ|1|13|U|850

Current chains

Chain 13
16S ribosomal RNA

Nearby chains

Chain 1E
30S ribosomal protein S2
Chain 9I
30S ribosomal protein S18

Coloring options:


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