3D structure

PDB id
6QNQ (explore in PDB, NAKB, or RNA 3D Hub)
Description
70S ribosome initiation complex (IC) with experimentally assigned potassium ions
Experimental method
X-RAY DIFFRACTION
Resolution
3.5 Å

Loop

Sequence
CGAA(M2G)(5MC)AACGCG
Length
12 nucleotides
Bulged bases
6QNQ|1|13|A|968, 6QNQ|1|13|G|971
QA status
Modified nucleotides: M2G, 5MC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_6QNQ_021 not in the Motif Atlas
Geometric match to HL_4WF9_003
Geometric discrepancy: 0.1023
The information below is about HL_4WF9_003
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_75660.7
Basepair signature
cWW-F
Number of instances in this motif group
22

Unit IDs

6QNQ|1|13|C|962
6QNQ|1|13|G|963
6QNQ|1|13|A|964
6QNQ|1|13|A|965
6QNQ|1|13|M2G|966
6QNQ|1|13|5MC|967
6QNQ|1|13|A|968
6QNQ|1|13|A|969
6QNQ|1|13|C|970
6QNQ|1|13|G|971
6QNQ|1|13|C|972
6QNQ|1|13|G|973

Current chains

Chain 13
16S ribosomal RNA

Nearby chains

Chain 1I
30S ribosomal protein S10
Chain 1K
Transfer RNA; tRNA
Chain 2K
Transfer RNA; tRNA
Chain 4I
30S ribosomal protein S13
Chain 5I
30S ribosomal protein S14 type Z
Chain 8E
30S ribosomal protein S9

Coloring options:


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