HL_6QNQ_031

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGG(MA6)(MA6)G

Length

6 nucleotides

Bulged bases

6QNQ|1|13|G|1517

QA status

Modified nucleotides: MA6

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QNQ_031 not in the Motif Atlas

Homologous match to HL_6CZR_103

Geometric discrepancy: 0.0921

The information below is about HL_6CZR_103

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.6

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

6QNQ|1|13|C|1515
6QNQ|1|13|G|1516
6QNQ|1|13|G|1517
6QNQ|1|13|MA6|1518
6QNQ|1|13|MA6|1519
6QNQ|1|13|G|1520

Current chains

Chain 13

16S ribosomal RNA

Nearby chains

Chain 1H

Large subunit ribosomal RNA; LSU rRNA