HL_6QNQ_052

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

CGAACAG

Length

7 nucleotides

Bulged bases

6QNQ|1|14|C|645

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QNQ_052 not in the Motif Atlas

Homologous match to HL_7RQB_021

Geometric discrepancy: 0.2662

The information below is about HL_7RQB_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_35490.2

Basepair signature

cWW-tSH-F-F

Number of instances in this motif group

299

Unit IDs

6QNQ|1|14|C|641
6QNQ|1|14|G|642
6QNQ|1|14|A|643
6QNQ|1|14|A|644
6QNQ|1|14|C|645
6QNQ|1|14|A|646
6QNQ|1|14|G|647

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 35

50S ribosomal protein L15

Chain K5

50S ribosomal protein L33

Chain M5

50S ribosomal protein L35