HL_6QNQ_059

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GGGAACAACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QNQ_059 not in the Motif Atlas

Geometric match to HL_2ZZM_002

Geometric discrepancy: 0.3261

The information below is about HL_2ZZM_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_13963.3

Basepair signature

cWW-F-F

Number of instances in this motif group

4

Unit IDs

6QNQ|1|14|G|977
6QNQ|1|14|G|978
6QNQ|1|14|G|979
6QNQ|1|14|A|980
6QNQ|1|14|A|981
6QNQ|1|14|C|982
6QNQ|1|14|A|983
6QNQ|1|14|A|984
6QNQ|1|14|C|985
6QNQ|1|14|C|986

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain 1J

5S ribosomal RNA; 5S rRNA

Chain 85

50S ribosomal protein L20

Chain H5

50S ribosomal protein L30