HL_6QNQ_067

3D structure

PDB id

6QNQ (explore in PDB, NAKB, or RNA 3D Hub)

Description

70S ribosome initiation complex (IC) with experimentally assigned potassium ions

Experimental method

X-RAY DIFFRACTION

Resolution

3.5 Å

Loop

Sequence

GUUAAUAUUC

Length

10 nucleotides

Bulged bases

6QNQ|1|14|U|1396, 6QNQ|1|14|U|1397

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_6QNQ_067 not in the Motif Atlas

Homologous match to HL_7RQB_036

Geometric discrepancy: 0.1206

The information below is about HL_7RQB_036

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_69023.2

Basepair signature

cWW-tWH-F-F-F-F

Number of instances in this motif group

16

Unit IDs

6QNQ|1|14|G|1389
6QNQ|1|14|U|1390
6QNQ|1|14|U|1391
6QNQ|1|14|A|1392
6QNQ|1|14|A|1393
6QNQ|1|14|U|1394
6QNQ|1|14|A|1395
6QNQ|1|14|U|1396
6QNQ|1|14|U|1397
6QNQ|1|14|C|1398

Current chains

Chain 14

23S ribosomal RNA

Nearby chains

Chain B5

50S ribosomal protein L23